Course Outline
|
| Date | Time | Room* | Theory | Pract. | Topic | Assignments |
| 17 Sept | 14-17 | 1.21 | . | Kirill | General info | HW1a: Data base searches in practice – Due date = October 8 |
| | | | | | Data bases and initiation in R | Any questions related to R and Bioconductor setup should be asked to the TA and be resolved before October 1 |
| 1 Oct | 14-18 | 1.21 | Kristel | . | Chapter 1: Molecular genetics | |
| | | | | | Chapter 2: Bioinformatics as a Discipline | |
| 8 Oct | 14-16.30 | 1.21 | Kristel | . | Chapter 3: Genome-Wide Association (GWA) Studies | |
| | | | | | What? Relation to Bioinformatics? How? Hurdles? | |
| 8 Oct | 17-18 | 1.21 | . | Kirill | Assignment: background information | HW1b: GWA studies – Due date = November 8 |
| 15 Oct | 14-18 | 1.21 | . | Kirill | Tutorial on GenABEL (incl, recapitulation on "regression" techniques in R) | |
| 22 Oct | 14-16.30 | 1.21 | Elena | . | Chapter 4: Genome-Wide Association Interaction (GWAI) Studies | |
| | | | | | What? How? Hurdles? | |
| 5 Nov | 14-18.00 | 1.21 | Kristel | . | Chapter 5: DNA Sequence Analysis | |
| | | | | | What? How? Hurdles? | |
| 12 Nov | 14-18.00 | 1.21 | . | Kirill | Tutorial on DNA Sequence Analysis | |
| | | | | | Assignment: background information + Feedback HW1 | HW2: Sequence analysis and alignment - Due date = December 10 |
| 19 Nov | 14-16.00 | 1.21 | guest: Ingrid Arijs | . | Chapter 6: Microarray Analysis | |
| | | | | | What? How? Hurdles? | |
| 12 Nov | 16-17.00 | 1.21 | . | Kirill | Assignment: background information + Feedback HW1 | HW3: Microarray Analysis / Clustering - Due date = January 8 |
| 26 Nov | 14-16.00 | 1.21 | guests: Ronald Westra / Steve Kelk | . | Chapter 7: Phylogenetic Analysis | |
| | | | | | What? How? Hurdles? | |
| 3 Dec | 14-16 | 1.21 | Kirill | . | Chapter 8: Data clustering | |
| 10 Dec | 14-16.30 | 1.21 | Kristel | Kirill | Oral presentations of HWs (litarature style) + interactive discussions / Exam details | |