Vân Anh Huynh-Thu
Three implementations of GENIE3 are available:
Note: All the results presented in the paper were generated using the MATLAB implementation.
You have also the possibility to run GENIE3 on the GP-DREAM platform.
Inferring regulatory networks from expression data using tree-based methods
Huynh-Thu, V. A., Irrthum, A., Wehenkel, L., and Geurts, P.
PLoS ONE, 5(9):e12776, 2010.
GENIE3 was best performer in the:
- MATLAB [Zip file]
Combining tree-based and dynamical systems for the inference of gene regulatory networks
Huynh-Thu, V. A. and Sanguinetti, G.
Bioinformatics, 31(10):1614-1622, 2015.