Vân Anh Huynh-Thu

Jump3 is a hybrid machine learning/model-based approach for the inference of gene regulatory networks from time series of expression data.

Related paper:
Combining tree-based and dynamical systems for the inference of gene regulatory networks
Huynh-Thu, V. A. and Sanguinetti, G.
Bioinformatics, 31(10):1614-1622, 2015.

A MATLAB implementation of Jump3 is available here.