Vân Anh Huynh-Thu

We derived an extension of the GENIE3 method for the inference of gene regulatory networks from systems genetics data. This extension is described in the following book chapter:

Gene regulatory network inference from systems genetics data using tree-based methods
Huynh-Thu V. A., Wehenkel L., and Geurts P.
In: A. de la Fuente (Ed.), Gene Network Inference - Verification of Methods for Systems Genetics Data, Springer, pp. 63-85, 2013.

Two implementations are available: