Recent Publications
Publications since 2007 only (full list of publications)
Journal articles and book chapters
| [23] | L. Trotta, E. Bullinger, and R. Sepulchre.
Global analysis of
dynamical decision-making models through local computation around the hidden
saddle.
PLoS One, 7(3):e33110, 2012.
(DOI) |
| [22] | D. Fey, S. Commins, and E. Bullinger.
Feedback control
strategies for spatial navigation revealed by dynamic modelling of learning
in the Morris water maze.
J Comput Neurosci, 30(2):447–454, 2011.
(DOI) |
| [21] | M. Schliemann, E. Bullinger, S. Borchers, F. Allgower,
R. Findeisen, and P. Scheurich.
Heterogeneity reduces
sensitivity of cell death for TNF-stimuli.
BMC Syst Biol, 5:204, December 2011.
(DOI)
(PMID:22204418) |
| [20] | E. Bullinger and M. Schliemann.
Review of three recent books
on the boundary of bioinformatics and systems biology.
BioMedical Engineering OnLine, 9(1):33, 2010.
(DOI) |
| [19] | D. Fey, R. Findeisen, and E. Bullinger.
Identification
of biochemical reaction networks using a parameter-free coordinate
system.
In P. A. Iglesias and B. Ingalls, editors, Control-Theoretic Approaches
in Systems Biology, pages 293–310. MIT Press, 2009. |
| [18] | H. Huber,
E. Bullinger, and M. Rehm.
Systems biology
approaches to the study of apoptosis.
In X.-M. Yin and Z. Dong, editors, Essentials of Apoptosis, pages
283–297. Humana Press, second edition, 2009.
(DOI) |
| [17] | E. Bullinger, D. Fey, M. Farina, and R. Findeisen.
Identifikation
biochemischer Reaktionsnetzwerke: Ein beobachterbasierter
Ansatz.
AT-Automatisierungstechnik, 56(5):269–279, 2008.
(DOI) |
| [16] | P. Wellstead, E. Bullinger, D. Kalamatianos, O. Mason, and
M. Verwoerd.
The rôle of
control and system theory in systems biology.
Annu Rev Control, 32:33–47, 2008.
(DOI) |
| [15] | E. Bullinger, R. Findeisen, D. Kalamatianos, and
P. Wellstead.
System and control
theory furthers the understanding of biological signal transduction.
In I. Queinnec, S. Tarbouriech, G. Garcia, and S.-I. Niculescu, editors,
Biology and Control Theory: Current Challenges, volume 357 of
Lecture Notes in Control and Information Sciences, pages
123–135. Springer-Verlag, 2007.
(DOI) |
| [14] | T. Eißing, S. Waldherr, F. Allgöwer, P. Scheurich,
and E. Bullinger.
Response to
Bistability in apoptosis: Roles of Bax, Bcl-2, and mitochondrial
permeability transition pores.
Biophys. J., 92(9):3332–3334, 2007.
(DOI)
(PMID:17277182) |
| [13] | T. Eißing, S. Waldherr, F. Allgöwer, P. Scheurich,
and E. Bullinger.
Steady state and
(bi-) stability evaluation of simple protease signalling networks.
BioSystems, 90(3):591–601, 2007.
(DOI) |
| [12] | T. Millat,
E. Bullinger, J. Rohwer, and O. Wolkenhauer.
Approximations and their
consequences for dynamic modelling of signal transduction pathways.
Math Bioscience, 207:40–57, 2007.
(DOI) |
Articles in Conference Proceedings
| [34] | M. Schliemann, R. Findeisen, and E. Bullinger.
Robustness-based model validation of an apoptosis signalling network model.
In 16th IFAC Symposium on System Identification Brussels, Belgium, 11–13
July, 2012.
In press. |
| [33] | D. Fey and E. Bullinger.
Limiting the
parameter search space for dynamic models with rational kinetics using
semi-definite programming.
In 11th IFAC Symposium on Computer Applications in Biotechnology, 7–9
July 2010, pages 150–155, Leuven, Belgium, 2010.
(DOI) |
| [32] | L. Trotta, R. Sepulchre, and E. Bullinger.
Delayed decision-making in
bistable models.
In Proc. of the 49th IEEE Conf. on Decision and
Control, Atlanta, GA, USA, pages 816–821, 2010.
(DOI) |
| [31] | D. Fey and E. Bullinger.
A dissipative
approach to the identification of biochemical reaction networks.
In 15th IFAC Symposium on System Identification, Saint Malo, France, 6–8
July 2009, pages 1259–1264, 2009. |
| [30] | P. Murray, S. Marshall, and E. Bullinger.
The
percentage occupancy hit or miss transform.
In Proc. 17th European Signal Processing Conference (EUSIPCO 2009)
Glasgow, Scotland, August 24-28, 2009, pages 253–257, 2009. |
| [29] | D. Fey, R. Findeisen,
and E. Bullinger.
Parameter
estimation in kinetic reaction models using nonlinear observers facilitated
by model extensions.
In Proc. of the 17th IFAC World Congress, Seoul,
Korea, pages 313–318, 2008. |
| [28] | M. Nickel, J. U.
Hammel, J. Herzen, E. Bullinger, and F. Beckmann.
High-density resolution
synchrotron radiation based X-ray microtomography (SRμCT) for
quantitative 3D-morphometrics in zoological sciences.
SPIE Optical Engineering+Application Conference, San Diego, California, USA,
10–14 August 2008, August 2008.
(DOI) |
| [27] | M. Farina,
E. Bullinger, R. Findeisen, and S. Bittanti.
An observability based strategy for parameter identification in systems
biology.
In Proc. of the 2nd Foundations of Systems Biology in
Engineering FOSBE 2007, 9–12 September, Stuttgart, Germany, pages
521–526, 2007. |
| [26] | M. Schliemann, T. Eißing, P. Scheurich, and
E. Bullinger.
Mathematical modelling of TNF-α induced anti-apoptotic signalling
pathways in mammalian cells based on dynamic and quantitative experiments.
In Proc. of the 2nd Foundations of Systems Biology in
Engineering FOSBE 2007, 9–12 September, Stuttgart, Germany, pages
213–218, 2007. |
| [25] | S. Streif,
R. Findeisen, and E. Bullinger.
Nonlinear sensitivity analysis of biochemical reaction networks, by bilinear
approximation.
In Proc. of the 2nd Foundations of Systems Biology in
Engineering FOSBE 2007, 9–12 September, Stuttgart, Germany, pages
515–520, 2007. |
Poster Presentations and Internal Reports
| [18] | D. Fey, S. Commins, and E. Bullinger.
Modelling and simulation of rat swimming in a water maze experiment.
In BioSysBio, 23–25 March 2009, Cambridge, UK, 2009. |
| [17] | M. Schliemann, P. Scheurich, and E. Bullinger.
A system understanding of TNF-α induced apoptotic and antiapoptotic
signalling: Combining single cell and population modelling with dynamic and
quantitative experiments.
In BioSysBio, 23–25 March 2009, Cambridge, UK, 2009. |
| [16] | D. Fey and E. Bullinger.
Exploiting biology specific properties for the estimation of kinetic
parameters.
In 2nd International Workshop on Systems Biology, Maynooth,
Ireland, 17–20 August 2008, 2008. |
| [15] | M. Schliemann, S. Borchers, P. Scheurich, and E. Bullinger.
TNF-α induced apoptotic and anti-apoptotic signalling: A systems
biology approach combining dynamic and quantitative experiments with
mathematical modelling.
In 2nd International Workshop on Systems Biology, Maynooth,
Ireland, 17–20 August 2008, 2008.
Best poster price awarded to M. Schliemann. |
| [14] | D. Fey and
E. Bullinger.
Model extension facilitates parameter estimation for kinetic reaction networks.
Proc. of the 2nd Foundations of Systems Biology in Engineering
FOSBE 2007, 9–12 September, Stuttgart, Germany, October 2007. |
| [13] | D. Fey and
E. Bullinger.
Model extension facilitates parameter estimation for kinetic reaction networks.
Proc. of the 8th Int. Conf. Systems Biology, Long Beach, CA,
USA, October 2007. |
| [12] | D. Fey and
E. Bullinger.
Model extension facilitates parameter estimation for kinetic reaction networks.
Computational Methods in Systems Biology (CMSB), Edinburgh, September
2007. |
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