3 | Best: rs3805006 (9) | Gene | 4.78-4.78Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs1962325 | ITPR1 | 4775550 | 0.3034 | 0.75 | 0.218 | 0.529 | 0.007 | 13 |
| rs3805006 | ITPR1 | 4775769 | 0.3783 | 7.498e-175 | 0.04268 | 7.163e-96 | 0.035 | 2 |
| rs3792498 | ITPR1 | 4776967 | 0.2352 | 1 | 0.7972 | 0.9223 | 0.0011 | 80 |
| rs7627280 | ITPR1 | 4777165 | 0.3084 | 0.8324 | 0.194 | 0.9644 | 0.009 | 9 |
| rs10510297 | ITPR1 | 4779000 | 0.3821 | 0.3184 | 0.1573 | 0.2982 | 0.00064 | 129 |
| rs3792499 | ITPR1 | 4779081 | 0.3091 | 0.4226 | 0.2465 | 0.2942 | 0.0012 | 74 |
| rs11712551 | ITPR1 | 4779199 | 0.3826 | 0.3671 | 0.1468 | 0.2888 | 0.00035 | 196 |
| rs3805011 | ITPR1 | 4782021 | 0.3506 | 0.1628 | 0.5434 | 0.634 | 0.00042 | 180 |
| rs11712379 | ITPR1 | 4782310 | 0.3692 | 0.247 | 0.2483 | 0.3808 | 0.0012 | 78 |
3 | Best: rs6440373 (5) | Gene | 146.99-146.99Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs9878603 | | 146988453 | 0.4113 | 0.2086 | 0.7026 | 0.6904 | 0.0037 | 24 |
| rs9845771 | | 146988887 | 0.4729 | 0.1745 | 0.3178 | 0.8203 | 0.0017 | 52 |
| rs9866001 | | 146989278 | 0.4728 | 0.2043 | 0.3178 | 0.7883 | 0.0017 | 53 |
| rs6770379 | | 146989547 | 0.4728 | 0.2047 | 0.355 | 0.8526 | 0.00036 | 193 |
| rs6440373 | | 146991474 | 0.464 | 1.149e-61 | 0.01673 | 9.126e-11 | 0.0046 | 17 |
6 | Best: rs3132486 (2) | Gene | 31.35-31.35Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs3132486 | | 31351149 | 0.3986 | 0.2891 | 0.2958 | 4.151e-47 | 0.00084 | 111 |
| rs2524067 | | 31353800 | 0.2181 | 0.5394 | 0.5653 | 1.015e-35 | 0.00073 | 121 |
6 | Best: rs9273363 (156) | Gene | 31.45-33.06Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs2853986 | | 31446823 | 0.1699 | 0.03424 | 0.4474 | 2.973e-41 | 0.0008 | 116 |
| rs2844559 | | 31448054 | 0.1868 | 0.5455 | 0.2195 | 4.489e-41 | 0.00053 | 146 |
| rs2442749 | | 31460019 | 0.3476 | 0.5422 | 0.9643 | 2.261e-37 | 0.00088 | 107 |
| rs9266774 | | 31460859 | 0.1298 | 0.1232 | 0.599 | 3.21e-31 | 0.00091 | 103 |
| rs9266775 | | 31461396 | 0.1296 | 0.123 | 0.5987 | 4.372e-31 | 0.00068 | 123 |
| rs2596517 | | 31468074 | 0.1443 | 0.8953 | 0.184 | 2.003e-31 | 0.00046 | 163 |
| rs2244579 | | 31544618 | 0.1969 | 0.5466 | 0.07149 | 2.342e-17 | 0.00041 | 184 |
| rs2248459 | | 31554689 | 0.4014 | 0.005865 | 0.6784 | 9.297e-61 | 0.0015 | 62 |
| rs2248462 | | 31554775 | 0.1884 | 0.02137 | 0.2007 | 2.579e-27 | 0.00037 | 190 |
| rs2248617 | | 31556512 | 0.4026 | 0.01665 | 1 | 3.346e-60 | 0.0012 | 73 |
| rs3099844 | | 31556955 | 0.1861 | 0.06411 | 0.7609 | 1.424e-43 | 0.00046 | 164 |
| rs3131631 | | 31592662 | 0.205 | 0.7217 | 0.7249 | 6.363e-30 | 0.00049 | 156 |
| rs9348876 | | 31683255 | 0.05545 | 0.4297 | 1 | 2.734e-19 | 0.00058 | 141 |
| rs2736177 | | 31694073 | 0.1031 | 0.7988 | 0.2214 | 8.227e-55 | 0.001 | 88 |
| rs1046089 | PRRC2A | 31710946 | 0.4393 | 0.9273 | 1 | 2.426e-74 | 0.002 | 48 |
| rs760293 | BAG6 | 31719756 | 0.1343 | 1 | 0.5205 | 8.852e-48 | 0.00045 | 170 |
| rs805301 | BAG6 | 31726100 | 0.4539 | 0.8541 | 0.4561 | 5.17e-73 | 0.0031 | 28 |
| rs805297 | APOM | 31730585 | 0.289 | 0.05218 | 0.4397 | 0.1166 | 0.0012 | 71 |
| rs9378164 | | 31751501 | 0.04717 | 0.6456 | 0.07279 | 4.6e-16 | 0.00048 | 157 |
| rs805294 | LY6G6C | 31796196 | 0.4199 | 0.001384 | 0.01778 | 1.684e-61 | 0.001 | 89 |
| rs707915 | MSH5MSH5-SAPCD1 | 31818947 | 0.07651 | 0.9039 | 1 | 3.031e-17 | 0.0004 | 187 |
| rs3130484 | MSH5MSH5-SAPCD1 | 31823861 | 0.1745 | 0.06824 | 1 | 1.294e-52 | 0.00092 | 100 |
| rs3131379 | MSH5MSH5-SAPCD1 | 31829012 | 0.1742 | 0.03251 | 0.8672 | 6.298e-51 | 0.00053 | 147 |
| rs3115672 | MSH5MSH5-SAPCD1 | 31835876 | 0.1601 | 0.04487 | 0.3725 | 3.626e-42 | 0.00045 | 167 |
| rs2075800 | HSPA1L | 31885925 | 0.3233 | 0.004919 | 0.1109 | 0.001185 | 0.00064 | 127 |
| rs2763979 | HSPA1B | 31902571 | 0.4184 | 0.103 | 1 | 9.093e-63 | 0.0027 | 34 |
| rs486416 | EHMT2 | 31964049 | 0.3478 | 0.01728 | 0.1262 | 0.03975 | 0.00057 | 142 |
| rs9267673 | | 31991658 | 0.1022 | 0.3943 | 0.9107 | 2.138e-06 | 0.00043 | 176 |
| rs644045 | | 31991936 | 0.3665 | 5.873e-06 | 0.003932 | 0.1233 | 0.00035 | 199 |
| rs9501161 | MIR1236RDBP | 32032306 | 0.07239 | 0.4042 | 0.5425 | 2.529e-06 | 0.00059 | 139 |
| rs406936 | SKIV2L | 32041140 | 0.103 | 0.1356 | 0.3641 | 1.78e-25 | 0.00052 | 152 |
| rs492899 | SKIV2L | 32041497 | 0.1027 | 0.02351 | 1 | 6.997e-22 | 0.0011 | 83 |
| rs3130287 | TNXB | 32158522 | 0.09951 | 0.726 | 0.1523 | 3.78e-79 | 0.0035 | 26 |
| rs1150753 | TNXB | 32167845 | 0.1745 | 0.02951 | 0.6128 | 5.514e-55 | 0.0017 | 54 |
| rs1269851 | ATF6B | 32200185 | 0.03867 | 0.5603 | 1 | 1.702e-15 | 0.0004 | 188 |
| rs408359 | AGPAT1 | 32249861 | 0.07836 | 0.808 | 0.1097 | 5.384e-14 | 0.00045 | 169 |
| rs2071278 | NOTCH4 | 32273422 | 0.2072 | 0.01799 | 0.6306 | 1.651e-44 | 0.00081 | 115 |
| rs3131294 | NOTCH4 | 32288124 | 0.09196 | 0.08409 | 0.1621 | 2.442e-97 | 0.0045 | 18 |
| rs379464 | NOTCH4 | 32294326 | 0.05862 | 1 | 0.5027 | 2.764e-14 | 0.00089 | 106 |
| SNP_A-2064274 | | 32300414 | 0.06877 | 2.9e-07 | 0.004294 | 1.877e-14 | 0.00053 | 145 |
| rs377763 | | 32307122 | 0.2808 | 7.51e-05 | 0.3749 | 1.09e-78 | 0.0039 | 22 |
| rs3134926 | | 32308125 | 0.2669 | 0.9494 | 0.7539 | 1.022e-10 | 0.00043 | 173 |
| rs424232 | | 32316302 | 0.3229 | 0.01199 | 0.3799 | 2.149e-33 | 0.00044 | 171 |
| rs9267954 | | 32321030 | 0.2982 | 0.01728 | 0.08553 | 4.577e-11 | 0.00074 | 119 |
| rs6936204 | | 32325070 | 0.3405 | 0.001124 | 0.03364 | 2.604e-06 | 0.002 | 46 |
| rs1559873 | | 32351107 | 0.2526 | 0.001163 | 0.2203 | 1.306e-16 | 0.00062 | 134 |
| rs9268208 | C6orf10 | 32388569 | 0.1806 | 0.02769 | 0.1782 | 2.396e-48 | 0.00091 | 102 |
| rs9268230 | C6orf10 | 32395545 | 0.2524 | 0.07848 | 0.05199 | 2.848e-97 | 0.0017 | 55 |
| rs3132959 | C6orf10 | 32406920 | 0.1647 | 0.4006 | 0.05227 | 3.991e-138 | 0.0057 | 14 |
| rs3129900 | C6orf10 | 32413957 | 0.1081 | 1 | 0.0778 | 1.769e-118 | 0.0033 | 27 |
| rs9368716 | C6orf10 | 32414068 | 0.4799 | 0.005629 | 0.333 | 1.789e-05 | 0.00047 | 161 |
| rs910049 | C6orf10 | 32423705 | 0.1681 | 0.04272 | 0.0002171 | 2.399e-137 | 0.0038 | 23 |
| rs2894249 | C6orf10 | 32433813 | 0.1615 | 0.5233 | 0.4025 | 3.298e-129 | 0.0022 | 44 |
| rs3129932 | C6orf10 | 32444105 | 0.1646 | 0.4011 | 0.05852 | 1.021e-137 | 0.0056 | 15 |
| rs3129933 | C6orf10 | 32444139 | 0.2188 | 0.0003976 | 0.1473 | 7.251e-19 | 0.00067 | 124 |
| rs3129934 | C6orf10 | 32444165 | 0.1084 | 1 | 0.04998 | 1.837e-119 | 0.004 | 20 |
| rs9268402 | C6orf10 | 32449331 | 0.4888 | 0.0001156 | 0.9119 | 0.001204 | 0.00066 | 125 |
| rs9391858 | C6orf10 | 32449376 | 0.1293 | 0.8958 | 0.3523 | 6.335e-17 | 0.00099 | 94 |
| rs9268403 | C6orf10 | 32449451 | 0.3542 | 1.695e-17 | 0.4866 | 1.039e-34 | 0.0017 | 56 |
| rs12201454 | | 32451664 | 0.3538 | 5.455e-17 | 0.4594 | 7.914e-35 | 0.001 | 87 |
| rs9268429 | | 32453030 | 0.3583 | 7.664e-17 | 0.001964 | 9.296e-31 | 0.00055 | 144 |
| rs12528797 | | 32453064 | 0.1033 | 0.891 | 0.5169 | 0.0003725 | 0.00036 | 191 |
| rs2894254 | | 32453667 | 0.1755 | 0.0001282 | 0.932 | 2.081e-60 | 0.0035 | 25 |
| rs3129953 | HCG23 | 32469799 | 0.2147 | 0.000142 | 0.4326 | 1.68e-38 | 0.00053 | 151 |
| rs2076533 | BTNL2 | 32471505 | 0.477 | 9.852e-05 | 0.7651 | 5.575e-14 | 0.00083 | 113 |
| rs2076530 | BTNL2 | 32471794 | 0.4819 | 6.694e-05 | 0.9406 | 5.681e-13 | 0.00042 | 178 |
| rs9268480 | BTNL2 | 32471822 | 0.3542 | 2.458e-17 | 0.4598 | 1.775e-34 | 0.0029 | 30 |
| rs3806156 | BTNL2 | 32481676 | 0.4082 | 7.604e-11 | 0.8744 | 7.792e-19 | 0.00089 | 105 |
| rs3763307 | BTNL2 | 32482600 | 0.3539 | 2.335e-17 | 0.4339 | 2.938e-34 | 0.0027 | 35 |
| rs3763308 | BTNL2 | 32482618 | 0.02622 | 1 | 0.6041 | 1.256e-19 | 0.0006 | 136 |
| rs6930933 | | 32491388 | 0.2207 | 8.733e-06 | 0.7051 | 4.643e-35 | 0.0014 | 69 |
| rs2001097 | | 32491836 | 0.2208 | 5.163e-06 | 0.7057 | 6.749e-35 | 0.00053 | 149 |
| rs9268541 | | 32492505 | 0.06689 | 1 | 0.1057 | 4.103e-09 | 0.00083 | 112 |
| rs3135378 | | 32493077 | 0.2209 | 5.178e-06 | 0.6595 | 9.46e-35 | 0.00039 | 189 |
| rs3135377 | | 32493377 | 0.148 | 0.5509 | 1 | 3.956e-155 | 0.0086 | 11 |
| rs3135376 | | 32493448 | 0.221 | 5.163e-06 | 0.5712 | 9.858e-35 | 0.00062 | 132 |
| rs2395167 | | 32496286 | 0.2217 | 1.511e-05 | 0.413 | 2.769e-35 | 0.0006 | 137 |
| rs9268557 | | 32497283 | 0.4605 | 1.22e-08 | 0.8534 | 1.064e-44 | 0.002 | 49 |
| rs9268560 | | 32497490 | 0.4333 | 1.765e-07 | 0.9705 | 2.71e-34 | 0.001 | 93 |
| rs3135363 | | 32497626 | 0.291 | 0.003441 | 0.2203 | 1.523e-10 | 0.0011 | 85 |
| rs3129847 | | 32504484 | 0.3253 | 2.165e-08 | 0.1748 | 4.231e-19 | 0.00048 | 158 |
| rs3135342 | | 32504593 | 0.3274 | 9.966e-08 | 0.3484 | 1.026e-19 | 0.0012 | 76 |
| rs7756262 | | 32506653 | 0.4309 | 2.327e-17 | 0.6284 | 1.709e-55 | 0.0029 | 29 |
| rs5000563 | | 32512113 | 0.3271 | 5.77e-08 | 0.3721 | 2.287e-19 | 0.00065 | 126 |
| rs3129872 | HLA-DRA | 32515131 | 0.327 | 5.803e-08 | 0.3723 | 1.889e-19 | 0.0005 | 154 |
| rs9268645 | HLA-DRA | 32516505 | 0.4386 | 6.341e-19 | 0.752 | 3.778e-57 | 0.0047 | 16 |
| rs3129877 | HLA-DRA | 32516575 | 0.3286 | 1.638e-08 | 0.4753 | 3.267e-20 | 0.0015 | 60 |
| rs3135393 | HLA-DRA | 32516820 | 0.227 | 0.0003467 | 0.1126 | 2.643e-32 | 0.0012 | 79 |
| rs3135392 | HLA-DRA | 32517220 | 0.3995 | 1.383e-11 | 0.3693 | 0.006895 | 0.0012 | 75 |
| rs3177928 | HLA-DRA | 32520413 | 0.1276 | 0.4314 | 0.6101 | 6.454e-15 | 0.00058 | 140 |
| rs7194 | HLA-DRA | 32520458 | 0.3721 | 3.651e-08 | 0.7004 | 3.205e-11 | 0.0015 | 61 |
| rs1051336 | HLA-DRA | 32520570 | 0.2266 | 6.738e-05 | 0.9032 | 1.046e-30 | 0.0015 | 59 |
| rs9268831 | | 32535726 | 0.4688 | 3.987e-08 | 0.2091 | 1.025e-25 | 0.0017 | 57 |
| rs9268853 | | 32537621 | 0.4079 | 1.389e-32 | 0.8735 | 1.05e-25 | 0.0028 | 31 |
| rs9268858 | | 32537736 | 0.4084 | 1.145e-31 | 0.9366 | 6.955e-26 | 0.0013 | 70 |
| rs9268861 | | 32537872 | 0.2426 | 2.593e-08 | 0.5022 | 5.434e-22 | 0.0009 | 104 |
| rs9268862 | | 32538145 | 0.2818 | 3.312e-08 | 0.8826 | 5.053e-16 | 0.00036 | 195 |
| rs7746922 | | 32538953 | 0.289 | 1.456e-07 | 5.227e-05 | 8.38e-11 | 0.00049 | 155 |
| rs9268877 | | 32539125 | 0.3089 | 0.02497 | 0.2401 | 2.072e-80 | 0.0021 | 45 |
| rs7749092 | | 32557028 | 0.2004 | 0.3361 | 0.4137 | 3.728e-86 | 0.0025 | 38 |
| rs9270986 | | 32682038 | 0.09374 | 1 | 0.1136 | 4.955e-164 | 0.01 | 7 |
| rs615672 | LOC100507709LOC100507714 | 32682149 | 0.371 | 1.532e-11 | 0.9668 | 2.313e-22 | 0.001 | 90 |
| rs9271208 | | 32686981 | 0.3065 | 2.33e-07 | 0.5042 | 1.331e-31 | 0.0014 | 66 |
| rs4530903 | | 32689867 | 0.1027 | 0.2391 | 0.8467 | 0.06591 | 0.0015 | 63 |
| rs9271850 | | 32703038 | 0.3565 | 4.699e-07 | 0.0001795 | 7.121e-17 | 0.0011 | 86 |
| rs3129768 | | 32703061 | 0.1196 | 0.1686 | 0.204 | 2.643e-118 | 0.0025 | 39 |
| rs9272219 | | 32710247 | 0.3073 | 7.387e-13 | 0.6979 | 5.678e-42 | 0.00062 | 133 |
| rs9272346 | HLA-DQA1 | 32712350 | 0.292 | 0.01289 | 0.8155 | 5.425e-149 | 0.0012 | 77 |
| rs9272723 | HLA-DQA1 | 32717405 | 0.2585 | 1 | 0.0004643 | 9.717e-153 | 0.0014 | 67 |
| rs9273363 | | 32734250 | 0.467 | 0.005832 | 0.6007 | 0 | 0.037 | 1 |
| rs9275134 | | 32758590 | 0.314 | 3.483e-19 | 0.5115 | 9.101e-81 | 0.0025 | 36 |
| rs2856688 | | 32762618 | 0.3135 | 4.757e-19 | 0.4792 | 1.071e-80 | 0.0014 | 64 |
| rs9469220 | | 32766288 | 0.3917 | 6.74e-06 | 0.7394 | 5.597e-112 | 0.01 | 8 |
| rs6457617 | | 32771829 | 0.4791 | 4.241e-16 | 0.631 | 7.947e-15 | 0.00087 | 108 |
| rs6457620 | | 32771977 | 0.4789 | 2.999e-16 | 0.6054 | 1.148e-14 | 0.0004 | 186 |
| rs2647046 | | 32776314 | 0.3952 | 2.945e-09 | 0.2189 | 0.0496 | 0.00091 | 101 |
| rs9275418 | | 32778222 | 0.3429 | 1.07e-16 | 0.4041 | 1.301e-120 | 0.0088 | 10 |
| SNP_A-4226034 | | 32778473 | 0.1294 | 0.1341 | 0.9367 | 0.04736 | 0.00076 | 118 |
| rs9275523 | | 32782972 | 0.3216 | 1.056e-21 | 0.565 | 2.186e-122 | 0.0083 | 12 |
| rs9275572 | | 32786977 | 0.4175 | 2.948e-12 | 0.8799 | 0.09441 | 0.002 | 47 |
| rs3957146 | | 32789508 | 0.2115 | 3.665e-12 | 0.2152 | 1.027e-198 | 0.019 | 3 |
| rs3104404 | | 32790152 | 0.09669 | 1 | 0.1033 | 3.982e-55 | 0.0018 | 51 |
| rs6936863 | | 32792007 | 0.3283 | 1.204e-08 | 0.1555 | 2.485e-83 | 0.0014 | 68 |
| rs3916765 | | 32793528 | 0.2017 | 1.632e-19 | 0.1426 | 3.631e-126 | 0.0043 | 19 |
| rs9275765 | | 32797302 | 0.292 | 1.43e-17 | 0.768 | 2.396e-28 | 0.0011 | 81 |
| rs9275772 | | 32797481 | 0.292 | 9.263e-18 | 0.7312 | 6.625e-28 | 0.0006 | 138 |
| rs9275793 | | 32798005 | 0.2923 | 2.105e-17 | 0.6946 | 6.806e-28 | 0.00043 | 177 |
| rs2395237 | | 32798923 | 0.3136 | 0.3121 | 0.4921 | 6.588e-41 | 0.00045 | 165 |
| rs2859090 | | 32808811 | 0.2451 | 4.724e-06 | 0.6742 | 7.77e-07 | 0.00064 | 128 |
| rs2227127 | HLA-DQA2 | 32819760 | 0.3184 | 0.619 | 0.363 | 3.138e-44 | 0.00098 | 95 |
| rs9276429 | HLA-DQA2 | 32820082 | 0.4796 | 0.3935 | 0.8238 | 6.034e-47 | 0.00086 | 109 |
| rs9276431 | HLA-DQA2 | 32820225 | 0.4796 | 0.3932 | 0.8527 | 2.931e-47 | 0.00062 | 131 |
| rs9276432 | HLA-DQA2 | 32820362 | 0.4792 | 0.3677 | 0.8528 | 7.9e-47 | 0.00041 | 181 |
| rs2239800 | HLA-DQA2 | 32821245 | 0.05117 | 0.6365 | 0.0001122 | 2.033e-22 | 0.00048 | 160 |
| rs9276435 | HLA-DQA2 | 32821845 | 0.2191 | 6.873e-06 | 0.2202 | 1.014e-10 | 0.00053 | 150 |
| rs9276440 | HLA-DQA2 | 32822761 | 0.4765 | 0.296 | 0.9409 | 6.051e-46 | 0.00057 | 143 |
| rs9276448 | | 32823607 | 0.07983 | 1 | 0.1807 | 0.01805 | 0.00043 | 175 |
| rs9276490 | MIR3135B | 32826659 | 0.475 | 0.4451 | 0.8818 | 7.82e-47 | 0.00093 | 99 |
| rs2051549 | HLA-DQB2 | 32838064 | 0.4843 | 0.3933 | 0.88 | 2.445e-49 | 0.0014 | 65 |
| rs9296043 | | 32844081 | 0.3341 | 0.9056 | 0.9064 | 1.311e-39 | 0.00051 | 153 |
| rs9296044 | | 32844122 | 0.338 | 0.5586 | 0.4377 | 5.242e-40 | 0.00046 | 162 |
| rs1015575 | | 32846093 | 0.3203 | 3.595e-05 | 0.4759 | 1.877e-45 | 0.0023 | 42 |
| rs2857212 | | 32848389 | 0.3137 | 0.1088 | 0.8743 | 3.287e-51 | 0.0027 | 32 |
| rs2621416 | | 32849846 | 0.2551 | 0.3547 | 0.9603 | 0.01873 | 0.00053 | 148 |
| rs12661352 | | 32853505 | 0.04202 | 0.6239 | 0.0001974 | 4.129e-15 | 0.00044 | 172 |
| rs17501267 | HLA-DOB | 32890127 | 0.03481 | 1 | 0.834 | 3.225e-16 | 0.00094 | 97 |
| rs2071474 | HLA-DOB | 32890560 | 0.2274 | 0.6234 | 1 | 2.368e-34 | 0.0012 | 72 |
| rs9784858 | | 32895153 | 0.104 | 0.1243 | 0.9032 | 2.208e-17 | 0.00081 | 114 |
| rs17429458 | | 32895315 | 0.0346 | 1 | 0.8331 | 6.652e-16 | 0.00034 | 200 |
| rs10484565 | TAP2 | 32903010 | 0.09506 | 0.1808 | 0.8933 | 7.532e-17 | 0.00093 | 98 |
| rs4148873 | TAP2 | 32908390 | 0.1235 | 0.09969 | 0.05146 | 9.197e-25 | 0.0019 | 50 |
| rs241427 | TAP2 | 32912392 | 0.2775 | 0.6543 | 0.5096 | 2.935e-63 | 0.0024 | 40 |
| rs4148882 | TAP1 | 32924936 | 0.2823 | 0.4334 | 0.5021 | 1.685e-50 | 0.0011 | 84 |
| rs9276832 | | 32940378 | 0.3385 | 0.0007804 | 0.2123 | 0.3045 | 0.00041 | 185 |
| rs3101942 | LOC100294145 | 32978035 | 0.3281 | 0.698 | 0.08263 | 2.818e-72 | 0.0027 | 33 |
| rs188245 | | 33063954 | 0.4926 | 0.7061 | 0.7076 | 1.442e-42 | 0.00095 | 96 |
10 | Best: rs7078771 (3) | Gene | 84.67-84.68Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs17101070 | NRG3 | 84669603 | 0.3604 | 0.2751 | 0.7506 | 0.08959 | 0.00036 | 192 |
| rs7078771 | NRG3 | 84679040 | 0.07564 | 3.307e-257 | 5.455e-05 | 5.421e-15 | 0.018 | 4 |
| rs17107795 | NRG3 | 84680434 | 0.06042 | 0.5077 | 0.4432 | 0.03057 | 0.004 | 21 |
11 | Best: rs1176741 (5) | Gene | 113.31-113.31Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs17116117 | HTR3B | 113306801 | 0.04371 | 0.0006049 | 0.116 | 1.374e-13 | 0.0022 | 43 |
| rs17116145 | HTR3B | 113309536 | 0.02764 | 1 | 0.5202 | 0.07791 | 0.00048 | 159 |
| rs1176741 | HTR3B | 113312525 | 0.0294 | 0.3803 | 0.1192 | 0.1124 | 0.0025 | 37 |
| rs1176740 | HTR3B | 113312606 | 0.0291 | 0.6322 | 0.1206 | 0.04971 | 0.0007 | 122 |
| rs1176738 | HTR3B | 113313305 | 0.02894 | 0.6306 | 0.1193 | 0.04874 | 0.001 | 92 |
13 | Best: rs7332105 (7) | Gene | 82.20-82.31Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs11619882 | | 82202815 | 0.3601 | 0.1279 | 0.2105 | 0.7135 | 0.00035 | 198 |
| rs4254200 | | 82213653 | 0.4683 | 3.583e-132 | 0.5954 | 6.2e-29 | 0.016 | 6 |
| rs9601965 | | 82215515 | 0.2232 | 0.4759 | 0.5929 | 0.7853 | 0.0024 | 41 |
| rs17260020 | | 82217462 | 0.222 | 0.6915 | 0.7876 | 0.94 | 0.001 | 91 |
| rs7332105 | | 82242107 | 0.4238 | 0.963 | 0.8212 | 0.3067 | 0.017 | 5 |
| rs9546233 | | 82296702 | 0.4162 | 0.9627 | 0.6223 | 0.2088 | 0.0016 | 58 |
| rs9546237 | | 82312847 | 0.4169 | 0.9628 | 0.6774 | 0.2173 | 0.00043 | 174 |
16 | Best: rs9924471 (2) | Gene | 28.48-28.50Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs151320 | CCDC101 | 28476179 | 0.1339 | 0.4112 | 0.2107 | 0.01198 | 0.00045 | 166 |
| rs9924471 | CCDC101 | 28499031 | 0.1688 | 1.739e-16 | 0.4687 | 1.398e-08 | 0.0006 | 135 |
17 | Best: rs12103453 (2) | Gene | 69.45-69.46Mb | MAF | HWE(case) | HWE(cont) | p-value | imp. | rank |
| rs12936105 | | 69445812 | 0.07708 | 0.7475 | 0.898 | 0.6991 | 0.00045 | 168 |
| rs12103453 | | 69456606 | 0.3928 | 2.664e-24 | 0.6064 | 8.714e-09 | 0.00073 | 120 |