T-Trees

A novel tree-based approach for Genome-Wide Association Studies

Supplementary data

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CAD coronary artery disease


1Best: rs1208054 (3)Gene86.95-86.98MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs166412869540830.12610.083490.49750.49170.00015130
rs691531869572990.19650.0013540.95520.00022250.0003179
rs1208054869830090.21650.73850.51030.61350.0008442
2Best: rs2164411 (3)Gene25.31-25.36MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs874401253139310.17550.12020.48040.58580.00015132
rs4665287253249600.17290.20790.29740.54660.00013146
rs2164411253645570.15616.968e-200.19460.012040.0006947
3Best: rs7628245 (6)Gene53.24-53.27MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs3736153TKT532374400.20080.29180.60060.48360.00014136
rs7628245TKT532479840.17841.179e-726.434e-052.96e-080.004716
rs12493802TKT532532810.43850.15260.14260.20970.00013155
rs7646760TKT532536930.241110.87840.28590.000558
rs9879195TKT532567900.27940.77470.06170.43170.00018112
rs7648309TKT532670220.34760.14780.68570.0061590.0002694
3Best: SNP_A-4302324 (4)Gene97.63-97.67MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs11916855976283650.4860.23560.35520.60370.0007246
rs326296976439170.44699.586e-070.050061.865e-050.001831
rs9829940976503390.41910.48210.22460.80070.0001196
SNP_A-4302324976650050.081620.505310.020720.003619
3Best: rs804974 (2)Gene121.83-121.83MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs8049801218264560.21921.064e-110.95620.19120.00022105
rs804974HGD1218344810.20750.57340.86760.4130.0004267
3Best: rs7653441 (2)Gene173.37-173.37MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs9864703FNDC3B1733711570.0157410.49190.56110.0005554
rs7653441FNDC3B1733744340.016792.564e-7610.33040.001929
4Best: rs1553460 (9)Gene17.85-17.90MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs1039539178508620.25880.90560.38040.55150.00016124
rs17523800178704430.37020.26340.93670.45230.00012170
rs11938418178712120.27990.45680.032680.35540.0002596
rs1553460178721300.31292.344e-1012.877e-051.784e-270.004617
rs1503880178784370.27690.60180.3390.13820.0005951
rs1503881178788980.26890.5630.32370.88840.0008640
rs1503882178789530.26820.52370.39660.85140.0004961
rs4698673178852660.27410.56720.54420.72660.0002791
rs6857578178965630.27410.4240.54590.83430.0004562
4Best: rs10022638 (7)Gene32.67-32.73MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs13112344326743590.22450.69080.39950.50190.00014138
rs4133379326798120.22460.35480.31480.6720.00017120
rs7440912326826350.21680.38220.66460.86020.0003277
rs7659833327016190.262310.39190.7590.00014144
rs6531531327191830.2673.315e-130.0014833.634e-080.0005953
rs11096892327213790.057010.51740.60890.78810.0002887
rs10022638327255530.30120.41630.43020.92790.0007644
4Best: rs9884478 (2)Gene73.28-73.30MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs9994192NPFFR2732810180.01248110.16050.00011178
rs9884478NPFFR2732996670.01266.781e-2310.058830.0002985
4Best: rs890447 (4)Gene139.61-139.63MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs11100890LINC004991396140790.039720.11050.2370.42580.0003574
rs3096659LINC004991396180160.11680.34110.16560.12130.00013150
rs890447LINC004991396185900.052172.704e-2050.022182.637e-120.0129
rs12509850LINC004991396286130.036360.17270.79720.78190.00023101
4Best: rs13126272 (5)Gene186.09-186.11MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs7659849ACSL11860863710.3320.002330.017540.83820.00014142
rs1996546ACSL11860894380.14190.032720.49280.78910.00021107
rs11132255ACSL11860938760.16410.15780.787610.00017118
rs11936062ACSL1SLED11860965190.16440.21220.94590.84360.00023102
rs13126272ACSL11861070890.34612.612e-680.030151.915e-090.001434
5Best: rs17411921 (8)Gene117.02-117.06MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs8420041170240050.1050.47990.15660.23410.0002497
rs9234501170286170.10090.9040.020730.1790.00018113
rs24164721170338450.32041.488e-240.93454.362e-100.002226
rs174119211170338760.34360.68820.36560.38240.003718
rs77144511170378180.24850.12940.80410.64840.0006349
rs77235081170448360.30230.10330.96520.70090.00015134
rs15268821170547710.075120.85890.80040.076560.00011192
rs173468221170582210.098450.68840.36070.23640.0007345
5Best: rs17076079 (4)Gene172.87-172.90MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs117387511728677850.39090.56640.35160.81510.00011183
rs9963731728748670.38580.70130.50710.68560.00011175
rs21126201728907710.23450.31080.95890.86390.000556
rs170760791728987580.096886.142e-1467.53e-074.694e-170.01110
6Best: rs4072775 (3)Gene18.18-18.19MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs10456820181808450.20940.23190.28880.53720.00015131
rs4072775181882300.35041.041e-052.709e-060.3270.0002399
rs16870039181883440.18919.374e-120.07171.695e-050.00019110
8Best: rs17480050 (12)Gene19.40-19.48MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs11784776CSGALNACT1193960110.20780.36710.77950.89830.0004960
rs17479749CSGALNACT1194048580.210.58350.65480.74020.0002595
rs4921657CSGALNACT1194151470.41060.34480.9090.58350.0009438
rs17480050CSGALNACT1194261970.11770100.0463
rs2975494CSGALNACT1194266110.1520.66830.94150.18320.0006748
rs17128573CSGALNACT1194340200.35120.48480.23920.76110.00228
rs10503652CSGALNACT1194341790.1510.49150.94120.15590.000557
rs17128604CSGALNACT1194415600.065720.72670.040250.2090.00011181
rs4922060CSGALNACT1194527880.17060.37590.84470.95610.0111
SNP_A-1992585194540710.18640.44970.71590.81060.000939
rs6996732CSGALNACT1194623080.21310.15440.74120.95960.00011182
rs7818368CSGALNACT1194838280.18770.37120.90360.91540.0004268
8Best: rs16883114 (2)Gene34.82-34.93MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs16883114348200720.026544.291e-1120.63681.657e-050.002921
rs10109855349283180.47920.81910.30060.80320.00015129
8Best: rs6989092 (3)Gene95.06-95.06MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs10956892950563450.40670.44620.0002590.091330.00017117
rs6989092950582140.0170910.72673.597e-350.002325
rs16916320950608750.029650.399710.27160.001533
8Best: rs16891338 (2)Gene119.71-119.74MbMAFHWE(case)HWE(cont)p-valueimp.rank
SNP_A-20279081197104350.023440.62350.68020.78320.0005355
rs16891338SAMD12-AS11197403780.023534.518e-940.40220.21660.00320
8Best: rs16908145 (3)Gene139.11-139.11MbMAFHWE(case)HWE(cont)p-valueimp.rank
SNP_A-22071181391064140.0216210.64860.88690.001335
rs16908145FLJ458721391071550.013920.0027110.40232.699e-210.002423
SNP_A-41937101391109480.022620.25340.660810.0009737
10Best: rs7906587 (6)Gene118.18-118.27MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs1431485PNLIPRP31181832060.09130.41690.57480.61440.0001195
rs7906587PNLIPRP31182216560.07761.038e-2850.004331.001e-280.0196
rs65854061182452870.057240.00096190.0076120.32550.00011190
rs24202961182489530.057210.00096140.00012860.30380.000381
rs107877041182685180.059940.69830.86690.33670.00023103
rs105100211182686350.060130.43570.73680.45820.0002889
11Best: rs10832215 (2)Gene14.14-14.16MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs10832215141371730.42730.9630.850.34520.00013159
rs9804490141607680.43850.88881.458e-060.43720.0001199
11Best: rs2241572 (7)Gene129.27-129.35MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs1650820NFRKB1292676170.30020.51140.93030.42830.0004365
rs1783919NFRKB1292697360.240.042140.14640.3080.0009836
rs2241572PRDM101292986580.34381.84499999999018e-313100.221
rs3734068PRDM101293202300.059850.84580.61350.3150.0294
rs6590429PRDM101293344690.044430.31250.81950.31480.00013149
rs2512904PRDM101293409570.058650.67340.13650.65890.00013147
rs7938742PRDM101293520860.063270.85590.14360.18670.0003278
12Best: rs2769432 (3)Gene94.31-94.32MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs2658728943059510.088280.000380.002632.655e-080.000383
rs2769432943064730.11630.43670.5240.76890.000382
rs301016943150740.119310.47710.60870.00019111
13Best: rs12430163 (3)Gene98.34-98.35MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs12430163DOCK9983363780.12060.91510.540.7990.0007843
rs2296999DOCK9983483520.16520.51480.37930.50280.0002692
SNP_A-4206368983507240.13010.061690.00051750.0031810.0004366
16Best: rs11640295 (5)Gene11.29-11.30MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs4451969112910200.3330.60530.081980.48120.00012166
rs181694112923300.21630.11940.95680.70560.00227
rs243315112925120.21560.10340.82770.74290.0005952
rs11640295112982290.28352.709e-400.0001455.067e-090.002424
rs4340345113016290.47840.58330.85330.6330.00012168
16Best: rs16955238 (4)Gene79.96-79.98MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs8057691GAN799582440.034180.720610.56810.00013153
SNP_A-2162323799700900.0225510.40360.94440.00014140
rs16955238799731920.027468.763e-1240.64641.75e-050.002822
rs16955259LOC100996430799776900.022950.62410.40360.83550.00016126
17Best: rs2641263 (2)Gene4.99-5.05MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs1819114USP649882030.37140.68630.0086975.894e-050.00014139
rs2641263LOC100130950SCIMP50543020.3570.80120.93640.095390.0003376
17Best: rs3785579 (12)Gene62.45-62.65MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs740558CACNG4624506740.33290.87550.0084740.067730.00021108
rs740557CACNG4624511390.1410.70450.17010.83460.0002790
rs740556CACNG4624511930.40460.77730.16610.28040.00023100
rs2159211CACNG4624526210.40730.47320.73120.023490.0003971
rs9892020624609040.1510.046520.00011160.48670.0138
rs4790993624656770.30480.5620.40150.06150.000650
rs2159210624664220.23810.53120.95930.84550.0177
rs726586624683670.001338110.15340.0002109
rs3785579CACNG1624729630.276800.0212300.132
rs8066806HELZ626291810.16750.93750.68140.042190.0002886
rs8080100HELZ626425040.15270.44330.24310.17560.0003872
rs16960718HELZ626476120.15260.44390.51070.14930.0003180
18Best: rs1595963 (2)Gene25.70-25.71MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs16947249257014390.03157110.3140.00017121
rs1595963257143460.039151.616e-1840.27152.068e-140.008513
18Best: rs4799934 (6)Gene33.34-33.37MbMAFHWE(case)HWE(cont)p-valueimp.rank
SNP_A-1817219333397310.054870.28230.46160.46440.0004959
rs1786811CELF4333407720.062110.85080.25840.46490.000469
rs1786776CELF4333414550.064660.46210.3520.70420.0003873
rs1786768CELF4333477440.064420.714810.37470.0003970
rs4799934CELF4333576650.077644.831e-2880.0028341.895e-260.025
rs4799942CELF4333715200.081630.16080.89580.018770.00016125
19Best: rs11671119 (3)Gene19.15-19.21MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs11671119MEF2BNB-MEF2B191470770.045082.632e-2010.11249.267e-180.00912
rs11668677NCAN192024460.031930.26040.0738410.00022104
rs11672216NCAN192055790.033420.27880.77020.81760.00012167
22Best: rs4819660 (3)Gene16.89-16.89MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs8139236FLJ41941168870500.18690.2750.90320.3040.0004464
rs4819660FLJ41941168931880.23298.455e-786.853e-075.103e-090.001632
rs4819661FLJ41941168933830.21060.48080.3720.34070.0008641
23Best: rs6588810 (2)Gene1.80-1.81MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs658881017969450.016290.0050592.22e-052.334e-080.001830
rs598984318087260.17480.0056250.011670.85290.000384
23Best: rs6527137 (2)Gene14.73-14.78MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs6527137147348420.49580.069780.7560.011170.00013152
rs4240155147811960.49380.069780.71680.0083230.00013156
23Best: rs11095312 (2)Gene33.63-33.71MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs17330535336250600.40210.2150.017210.58230.00012163
rs11095312337107620.4230.10260.00068710.6970.00018115
23Best: rs11095405 (4)Gene35.42-35.46MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs5928946354181940.45830.54630.0078610.73810.00012171
rs7056322354207390.46020.26360.040350.71740.00013154
rs12842521354608750.46010.54620.012280.66210.00013148
rs11095405354636390.46180.18420.23830.4990.00016123
23Best: rs241863 (2)Gene97.74-97.78MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs2335828977401660.45580.26580.067030.2170.0001194
rs241863977813120.4830.068730.05270.29160.00012173
23Best: rs7050888 (2)Gene100.06-100.09MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs125571591000618870.41780.004280.14810.49910.00014143
rs7050888TRMT2B1000881960.47440.22270.29820.13650.00015127
23Best: rs2290514 (3)Gene117.93-117.93MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs2290514LONRF31179291150.36080.0032720.056330.36410.00015133
rs6603465LONRF31179293470.34980.067820.0038390.68390.00011191
rs2278954LONRF31179301110.36170.0023720.049540.40860.00015135
23Best: rs5919854 (3)Gene144.27-144.34MbMAFHWE(case)HWE(cont)p-valueimp.rank
rs59658591442744100.44020.0022360.20570.14150.00017119
rs59198541442794990.43980.00069750.36790.15470.0002888
rs65256081443416290.47230.012180.19230.15080.0002693