T-Trees

A novel tree-based approach for Genome-Wide Association Studies

Supplementary data

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1	Best: rs1896250 (6)	Gene	80.57-80.57Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1365752		80568982	0.3791	0.1435	0.4782	0.174	0.0013	34
	rs1365754		80569197	0.3856	0.1329	0.3474	0.1754	0.00049	84
	rs1896250		80569215	0.3999	9.756e-09	0.9372	3.355e-06	0.002	29
	rs1549553		80569915	0.3795	0.1304	0.5025	0.1478	0.00042	98
	rs1549556		80570515	0.3868	0.1327	0.5571	0.22	0.00058	74
	rs1549557		80570530	0.3797	0.1308	0.6082	0.181	0.00065	65
1	Best: rs668860 (2)	Gene	85.15-85.16Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs668860		85148483	0.4719	0.006737	0.9406	0.8479	0.00032	123
	rs10873672		85162747	0.4784	0.9631	0.8823	0.1425	0.00014	200
1	Best: rs12134541 (2)	Gene	118.80-118.80Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs12134541		118796533	0.4795	1	0.9116	0.4382	0.00029	133
	rs7413837		118797124	0.4746	0.222	0.7956	0.6272	0.00017	169
1	Best: rs1909194 (2)	Gene	219.15-219.16Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs17464857	LOC100506161 NCBI Gene Pubmed Genecard TAF1A NCBI Gene Pubmed Genecard	219151104	0.1572	0.0005696	0.3357	0.005171	0.00022	152
	rs1909194		219159098	0.1541	0.6532	0.04119	0.6637	0.00086	56
2	Best: rs2164411 (3)	Gene	25.31-25.36Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs874401		25313931	0.1744	0.4714	0.4804	0.847	0.00088	53
	rs4665287		25324960	0.1707	0.1896	0.2974	0.9114	0.00064	66
	rs2164411		25364557	0.1541	2.035e-10	0.1946	0.001213	0.0015	32
2	Best: rs2315380 (2)	Gene	132.99-132.99Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2315380		132991575	0.3942	0.8095	0.3486	0.1896	0.00032	126
	rs11690367		132992008	0.4032	1.748e-06	0.9686	0.2999	0.00022	151
3	Best: rs804974 (4)	Gene	121.76-121.83Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs805009		121763466	0.4548	0.3055	0.7093	0.3232	0.00026	141
	rs804998		121766635	0.4548	0.3278	0.3515	0.4618	0.00017	172
	rs804980		121826456	0.2232	8.022e-19	0.9562	0.01268	0.0021	25
	rs804974	HGD NCBI Gene Pubmed Genecard	121834481	0.2111	0.06129	0.8676	0.8174	0.0024	24
3	Best: rs7653441 (3)	Gene	173.37-173.40Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs9864703	FNDC3B NCBI Gene Pubmed Genecard	173371157	0.01624	1	0.4919	0.3204	0.0021	26
	rs7653441	FNDC3B NCBI Gene Pubmed Genecard	173374434	0.01824	5.907e-86	1	0.0226	0.0095	9
	rs7633114	FNDC3B NCBI Gene Pubmed Genecard	173400579	0.06332	0.3276	0.04048	0.9657	0.00019	166
4	Best: rs1553460 (10)	Gene	17.85-17.90Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1039539		17850862	0.2638	0.4471	0.3804	0.04709	0.00082	59
	rs17523800		17870443	0.3646	0.802	0.9367	0.5142	0.00038	107
	rs11938418		17871212	0.2809	0.2721	0.03268	0.5144	0.001	45
	rs1553460		17872130	0.3134	8.847e-94	2.877e-05	1.281e-28	0.014	4
	rs6854222		17878043	0.007495	1	1	0.004916	0.00032	122
	rs1503880		17878437	0.2793	0.1036	0.339	0.4143	0.0013	33
	rs1503881		17878898	0.2751	0.4608	0.3237	0.06403	0.0018	30
	rs1503882		17878953	0.2749	0.5709	0.3966	0.04121	0.0012	42
	rs4698673		17885266	0.2811	0.6961	0.5442	0.0237	0.00047	89
	rs6857578		17896563	0.2811	0.5392	0.5459	0.03404	0.00053	80
4	Best: rs615604 (2)	Gene	23.67-23.67Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs615604		23665037	0.1574	0.433	0.8345	0.9313	0.00023	147
	rs582804		23668742	0.1572	0.3845	0.9443	0.8181	0.00014	191
4	Best: rs17484678 (5)	Gene	149.61-149.66Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1512343	NR3C2 NCBI Gene Pubmed Genecard	149608562	0.3784	0.4247	0.4836	0.04036	0.002	28
	rs11099694	NR3C2 NCBI Gene Pubmed Genecard	149625314	0.3458	0.4777	0.8055	0.3112	0.00014	199
	rs17484671	NR3C2 NCBI Gene Pubmed Genecard	149625741	0.2481	1.581e-18	0.06269	0.09416	0.004	20
	rs17484678	NR3C2 NCBI Gene Pubmed Genecard	149625751	0.1365	0.05682	0.4073	0.01586	0.0082	10
	rs6849903	NR3C2 NCBI Gene Pubmed Genecard	149656651	0.2371	1	0.1711	0.5224	0.00014	195
4	Best: rs13126272 (5)	Gene	186.09-186.11Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7659849	ACSL1 NCBI Gene Pubmed Genecard	186086371	0.3301	0.03949	0.01754	0.4938	0.00022	153
	rs1996546	ACSL1 NCBI Gene Pubmed Genecard	186089438	0.1416	0.7045	0.4928	0.8571	0.00033	120
	rs11132255	ACSL1 NCBI Gene Pubmed Genecard	186093876	0.1639	0.4997	0.7876	1	0.0011	43
	rs11936062	ACSL1 NCBI Gene Pubmed Genecard SLED1 NCBI Gene Pubmed Genecard	186096519	0.1639	0.6702	0.9459	0.9773	0.00048	85
	rs13126272	ACSL1 NCBI Gene Pubmed Genecard	186107089	0.341	2.3e-43	0.03015	1.272e-06	0.0032	22
5	Best: rs7733705 (2)	Gene	59.67-59.67Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs6862735	PDE4D NCBI Gene Pubmed Genecard	59669933	0.1678	0.7098	0.1674	0.0001799	0.00028	140
	rs7733705	PDE4D NCBI Gene Pubmed Genecard	59671110	0.1734	0.1773	0.2329	0.06404	0.0013	39
6	Best: rs4072775 (4)	Gene	18.18-18.29Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10456820		18180845	0.2143	0.3061	0.2888	0.4253	0.0007	62
	rs4072775		18188230	0.3551	9.182e-07	2.709e-06	0.8438	0.0011	44
	rs16870039		18188344	0.194	4.521e-08	0.0717	0.005083	0.00047	87
	rs365237	KDM1B NCBI Gene Pubmed Genecard	18294676	0.0767	1	9.968e-05	0.0002366	0.00016	174
6	Best: rs6903505 (3)	Gene	91.73-91.75Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7775358		91726062	0.4341	5.595e-05	0.9088	4.412e-06	0.00061	68
	rs6903505		91728665	0.4085	0.3409	0.7591	0.225	0.0009	52
	rs6454833		91748167	0.4082	0.233	0.7302	0.3485	0.00038	103
6	Best: rs1319912 (3)	Gene	96.00-96.03Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs6905412		96003236	0.1583	1.753e-05	0.5734	0.4044	0.0003	131
	rs6910024		96003452	0.1647	0.001271	1.733e-06	0.9101	0.0002	160
	rs1319912		96025216	0.1027	0.2889	0.3128	0.5958	0.00032	121
6	Best: rs9320174 (4)	Gene	107.09-107.09Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10499047	AIM1 NCBI Gene Pubmed Genecard	107089821	0.3174	0.112	0.3677	0.2697	0.00014	198
	rs9480682	AIM1 NCBI Gene Pubmed Genecard	107090099	0.3168	0.09061	0.4923	0.3009	0.00014	193
	rs9320173	AIM1 NCBI Gene Pubmed Genecard	107091362	0.3165	0.1121	0.4924	0.322	0.00023	149
	rs9320174	AIM1 NCBI Gene Pubmed Genecard	107092101	0.3364	0.2939	0.1448	0.0001077	0.00026	143
6	Best: rs9377114 (3)	Gene	148.51-148.51Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1934811		148513254	0.435	2.284e-11	0.1426	0.003161	0.00054	78
	rs9377114		148514719	0.4442	0.03113	0.4548	0.8168	0.00059	72
	rs9390544		148514752	0.4442	0.03869	0.525	0.8002	0.00052	83
6	Best: rs9322256 (2)	Gene	150.77-150.77Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs9322256		150769868	0.3766	0.5509	0.6954	0.3522	0.00057	77
	rs9322257		150769904	0.3963	0.001067	0.3061	0.07976	0.0002	159
6	Best: rs2236014 (3)	Gene	153.40-153.42Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2236014	MTRF1L NCBI Gene Pubmed Genecard	153402446	0.259	5.117e-08	0.1757	0.7165	0.00059	71
	rs2236016	MTRF1L NCBI Gene Pubmed Genecard	153405574	0.2764	0.3095	0.7783	0.04667	0.0003	130
	rs9397578		153421622	0.2761	0.3087	0.6726	0.04907	0.00026	142
7	Best: rs7781714 (2)	Gene	23.37-23.37Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7781714		23366719	0.4725	0.4308	0.5535	0.6299	0.00024	146
	rs6949019		23367290	0.4523	6.361e-06	0.06705	0.02506	0.00015	186
8	Best: rs17480050 (16)	Gene	19.35-19.48Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs17407449	CSGALNACT1 NCBI Gene Pubmed Genecard	19348064	0.1233	0.9108	0.618	0.1347	0.00029	134
	rs13261824	CSGALNACT1 NCBI Gene Pubmed Genecard	19358192	0.4849	0.8529	0.2682	0.414	0.00021	156
	rs7002507	CSGALNACT1 NCBI Gene Pubmed Genecard	19368363	0.138	0.1777	0.4605	0.001432	0.00028	138
	rs4922040	CSGALNACT1 NCBI Gene Pubmed Genecard	19385519	0.338	0.6436	0.7083	0.2672	0.00025	145
	rs11784776	CSGALNACT1 NCBI Gene Pubmed Genecard	19396011	0.2061	0.6672	0.7795	0.5009	0.0013	35
	rs17479749	CSGALNACT1 NCBI Gene Pubmed Genecard	19404858	0.2079	0.9436	0.6548	0.7766	0.0012	41
	rs9644631	CSGALNACT1 NCBI Gene Pubmed Genecard	19415110	0.412	0.2923	0.9697	0.6398	0.00019	165
	rs4921657	CSGALNACT1 NCBI Gene Pubmed Genecard	19415147	0.4109	0.3381	0.909	0.6245	0.0026	23
	rs17480050	CSGALNACT1 NCBI Gene Pubmed Genecard	19426197	0.119	0	1	0	0.12	1
	rs2975494	CSGALNACT1 NCBI Gene Pubmed Genecard	19426611	0.1549	1	0.9415	0.0202	0.0013	37
	rs17128573	CSGALNACT1 NCBI Gene Pubmed Genecard	19434020	0.3536	0.9599	0.2392	0.3575	0.0049	17
	rs10503652	CSGALNACT1 NCBI Gene Pubmed Genecard	19434179	0.154	1	0.9412	0.0148	0.0013	38
	rs4922060	CSGALNACT1 NCBI Gene Pubmed Genecard	19452788	0.1677	0.5542	0.8447	0.3701	0.026	3
	SNP_A-1992585		19454071	0.1829	0.3806	0.7159	0.1757	0.0033	21
	rs6996732	CSGALNACT1 NCBI Gene Pubmed Genecard	19462308	0.2127	0.9448	0.7412	0.9592	0.00046	91
	rs7818368	CSGALNACT1 NCBI Gene Pubmed Genecard	19483828	0.1884	0.6523	0.9036	0.7684	0.0008	60
8	Best: rs11984645 (6)	Gene	55.10-55.23Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs6983650		55100384	0.02156	1	0.4023	0.6656	0.00015	184
	rs8822	LYPLA1 NCBI Gene Pubmed Genecard	55122566	0.02215	1	0.4057	0.4322	0.00014	192
	rs16919782		55225990	0.1501	0.931	0.2964	0.06491	0.00017	170
	rs16919784		55226091	0.151	0.795	0.4169	0.1079	0.00044	94
	rs11984645		55231858	0.145	1.073e-07	1	0.04583	0.00091	51
	rs4737503		55233872	0.171	0.2078	0.2295	0.09541	0.00028	136
8	Best: rs1909935 (2)	Gene	82.41-82.41Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1909935		82407915	0.02144	1	0.6289	0.1696	0.013	5
	rs1909936		82408006	0.01823	2.399e-40	0.629	0.1539	0.0071	12
8	Best: rs2469997 (3)	Gene	120.42-120.42Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2469997		120422448	0.1889	0.604	0.8546	0.3092	0.00047	88
	rs6469823		120423165	0.1848	0.7006	0.7135	0.957	0.00016	179
	rs2447179		120424956	0.1849	0.5378	0.7602	0.8927	0.00032	125
10	Best: rs12355606 (2)	Gene	18.53-18.54Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10828308	CACNB2 NCBI Gene Pubmed Genecard	18534882	0.009393	1	1	0.1026	0.00058	76
	rs12355606	CACNB2 NCBI Gene Pubmed Genecard	18537827	0.006391	1	1	8.349e-12	0.00092	50
10	Best: rs7086449 (2)	Gene	43.64-43.64Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7086449		43637124	0.1257	8.947e-06	1	0.0001156	0.0003	129
	rs12266918		43638241	0.139	0.9202	0.7627	0.204	0.00022	155
10	Best: rs1395043 (2)	Gene	59.23-59.24Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1395043		59229743	0.08369	0.7466	0.07709	0.1363	0.0004	102
	rs1505923		59239732	0.1353	1.051e-05	0.8073	0.118	0.00038	106
10	Best: rs7082404 (2)	Gene	77.12-77.15Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7082404		77116071	0.003651	1	1	1.517e-06	0.00048	86
	rs1875163		77146649	0.006349	1	1	0.1134	0.00044	93
11	Best: rs1176741 (3)	Gene	113.31-113.31Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs17116117	HTR3B NCBI Gene Pubmed Genecard	113306801	0.04118	0.1197	0.116	8.539e-10	0.0058	14
	rs17116145	HTR3B NCBI Gene Pubmed Genecard	113309536	0.02727	1	0.5202	0.03917	0.00082	58
	rs1176741	HTR3B NCBI Gene Pubmed Genecard	113312525	0.02895	0.6266	0.1192	0.04583	0.012	7
12	Best: rs826886 (2)	Gene	37.33-37.38Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs11168985	CPNE8 NCBI Gene Pubmed Genecard	37332250	0.4474	0.3093	0.9097	0.18	0.00015	182
	rs826886	CPNE8 NCBI Gene Pubmed Genecard	37382064	0.4521	0.1746	0.8232	0.6739	0.00016	177
12	Best: rs11112069 (4)	Gene	103.37-103.40Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs11112069	CHST11 NCBI Gene Pubmed Genecard	103369485	0.1988	3.638e-22	0.3511	1.137e-07	0.0021	27
	rs7973993	CHST11 NCBI Gene Pubmed Genecard	103374839	0.1049	1	0.5432	0.1514	0.00021	157
	rs17035655	CHST11 NCBI Gene Pubmed Genecard IGANRP NCBI Gene Pubmed Genecard	103388851	0.1608	0.2381	1	0.425	0.0002	158
	rs2141859	CHST11 NCBI Gene Pubmed Genecard	103402448	0.457	0.3988	0.7385	0.03566	0.00022	154
12	Best: rs6489228 (3)	Gene	127.06-127.06Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs11059460		127063093	0.4664	3.147e-09	0.9704	0.002654	0.00096	49
	rs10773472		127063120	0.4803	0.4034	0.7956	0.3562	0.00087	54
	rs6489228		127064925	0.4793	0.6427	0.8825	0.346	0.0016	31
14	Best: rs435340 (4)	Gene	43.99-44.06Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs17115043		43990139	0.1144	0.1055	0.5067	0.04851	0.00034	116
	rs435340		44004257	0.09599	2.557e-06	0.05542	0.005402	0.00097	47
	rs381820		44004352	0.114	0.08371	0.5675	0.04811	0.00058	75
	rs1959387		44063220	0.1125	0.04861	0.5013	0.06355	0.00032	124
15	Best: rs8027733 (20)	Gene	40.88-41.32Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10467975	TTBK2 NCBI Gene Pubmed Genecard	40884944	0.09372	0.8846	1	0.1139	0.0003	128
	rs10518779	TTBK2 NCBI Gene Pubmed Genecard	40915917	0.1864	0.5067	0.95	0.04872	0.00037	109
	rs16957244	TTBK2 NCBI Gene Pubmed Genecard	40953321	0.1161	0.907	0.6594	0.2958	0.00063	67
	rs8036096	TTBK2 NCBI Gene Pubmed Genecard	40958312	0.3072	0.7888	0.8608	0.1528	0.0013	40
	rs1381855	UBR1 NCBI Gene Pubmed Genecard	41051297	0.3078	0.707	0.7934	0.2764	0.0006	69
	rs6416436	UBR1 NCBI Gene Pubmed Genecard	41075511	0.1164	0.7256	0.3795	0.2531	0.00059	70
	rs4923955	UBR1 NCBI Gene Pubmed Genecard	41082380	0.1168	0.7255	0.4854	0.2153	0.00053	79
	rs1037990	UBR1 NCBI Gene Pubmed Genecard	41086979	0.1162	0.6425	0.6593	0.3114	0.0004	101
	rs8027733	UBR1 NCBI Gene Pubmed Genecard	41101610	0.118	0.9087	0.3388	0.3471	0.012	6
	rs6493076	UBR1 NCBI Gene Pubmed Genecard	41105432	0.1165	0.8165	0.5383	0.3118	0.005	16
	rs4923956	UBR1 NCBI Gene Pubmed Genecard	41125944	0.3061	1	0.8607	0.3262	0.0068	13
	rs12050604	UBR1 NCBI Gene Pubmed Genecard	41144698	0.2741	1.41e-19	0.9648	4.19e-11	0.011	8
	rs17720657	UBR1 NCBI Gene Pubmed Genecard	41164896	0.1535	0.73	0.3456	0.1817	0.00096	48
	rs4924705	UBR1 NCBI Gene Pubmed Genecard	41167552	0.1886	0.3453	0.9505	0.03674	0.0079	11
	rs7402998		41208018	0.1852	1	0.9517	0.45	0.00019	164
	rs2176870	TMEM62 NCBI Gene Pubmed Genecard	41223702	0.2214	0.8407	0.8303	0.8997	0.00017	171
	rs2899077	EPB42 NCBI Gene Pubmed Genecard	41297317	0.0972	0.5766	0.5421	0.0963	0.00031	127
	rs11070396		41310214	0.09737	0.5725	0.6131	0.06598	0.00053	81
	rs502157	TGM5 NCBI Gene Pubmed Genecard	41315865	0.3226	0.4207	0.05855	0.2092	0.0002	161
	rs7183814	TGM5 NCBI Gene Pubmed Genecard	41316922	0.09767	0.6742	0.7615	0.09047	0.00037	108
16	Best: rs1048194 (12)	Gene	79.58-79.70Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2549860	CMC2 NCBI Gene Pubmed Genecard	79584643	0.1722	0.9352	0.8972	0.8898	0.00014	190
	rs1048194	CENPN NCBI Gene Pubmed Genecard	79622203	0.09549	2.22329540628561e-322	9.949e-06	3.663e-39	0.066	2
	rs12456	CENPN NCBI Gene Pubmed Genecard	79622560	0.07713	0.5381	0.6863	0.1822	0.00084	57
	rs2970077	ATMIN NCBI Gene Pubmed Genecard	79632301	0.08184	0.7667	0.5265	0.3019	0.0003	132
	rs10459871	C16orf46 NCBI Gene Pubmed Genecard	79650568	0.08389	0.4647	0.1781	0.406	0.001	46
	rs10459872	C16orf46 NCBI Gene Pubmed Genecard	79652452	0.08552	1	0.9031	0.2409	0.00033	118
	rs16954582		79671658	0.07521	0.8708	1	0.5513	0.00067	63
	rs10514513		79671684	0.07535	0.6258	1	0.5253	0.00035	112
	rs10514514	GCSH NCBI Gene Pubmed Genecard	79672774	0.07101	0.0004741	0.0004597	0.462	0.00053	82
	rs12445303	GCSH NCBI Gene Pubmed Genecard	79673074	0.07472	0.5224	0.5842	0.3006	0.00015	187
	rs8177959	GCSH NCBI Gene Pubmed Genecard	79673188	0.07554	0.7497	0.7864	0.4285	0.00014	194
	rs2316730	PKD1L2 NCBI Gene Pubmed Genecard	79697141	0.06606	0.000252	2.577e-06	0.8659	0.00042	99
17	Best: SNP_A-1948953 (2)	Gene	17.27-17.27Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16961675	SMCR9 NCBI Gene Pubmed Genecard	17266676	0.3224	0.9145	0.3353	0.1941	0.00034	114
	SNP_A-1948953		17267088	0.2816	9.927e-24	0.005177	3.974e-05	0.0013	36
18	Best: rs1442650 (2)	Gene	38.22-38.22Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs9304271	LOC284260 NCBI Gene Pubmed Genecard	38223312	0.2029	0.199	0.1704	0.8554	0.00015	183
	rs1442650	LOC284260 NCBI Gene Pubmed Genecard	38224157	0.01045	1	0.5236	2.315e-13	0.00075	61
19	Best: rs12980129 (3)	Gene	22.69-22.71Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16999569		22694550	0.02519	1	0.4036	0.05252	0.00035	111
	rs12980129		22700751	0.0281	1	1	5.93e-05	0.00046	90
	rs2194111		22714389	0.02519	0.4062	0.403	0.03822	0.00023	148
21	Best: rs4816560 (3)	Gene	37.37-37.41Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7275582	TTC3 NCBI Gene Pubmed Genecard	37373000	0.4665	0.8159	0.3934	0.7687	0.00034	115
	rs9974286	TTC3 NCBI Gene Pubmed Genecard	37378702	0.4576	0.007366	0.4138	0.01133	0.00038	105
	rs4816560	TTC3 NCBI Gene Pubmed Genecard	37409431	0.4682	0.852	0.3735	0.7051	0.00041	100
21	Best: rs999789 (4)	Gene	39.35-39.37Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs4279007		39346824	0.3784	0.151	0.6674	0.3209	0.00043	97
	rs999789		39348321	0.05813	0.04181	0.3492	0.0008703	0.00058	73
	rs999790		39348638	0.4408	0.8475	0.3558	0.06367	0.00036	110
	rs428424		39367189	0.4164	0.1968	0.2255	0.3183	0.00038	104
23	Best: rs1419930 (2)	Gene	2.58-2.58Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs1419930		2580231	0.04436	0.01813	5.712e-19	0.003325	0.0045	19
	rs310138		2580406	0.2368	3.66e-09	0.005478	0.005915	0.00087	55
23	Best: rs975687 (2)	Gene	110.31-110.32Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16986464	CAPN6 NCBI Gene Pubmed Genecard	110310427	0.02786	1	1	0.007973	0.00016	176
	rs975687	CAPN6 NCBI Gene Pubmed Genecard	110318150	0.0306	1	1	0.0002673	0.00067	64