T-Trees

A novel tree-based approach for Genome-Wide Association Studies

Supplementary data

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3	Best: rs10513440 (2)	Gene	154.52-154.52Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7612570		154515875	0.173	0.9402	8.02e-05	0.008895	0.0002	120
	rs10513440		154523522	0.2006	0.3875	0.002706	0.0003721	0.0003	84
5	Best: rs17761026 (2)	Gene	10.65-10.66Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2128760	ANKRD33B NCBI Gene Pubmed Genecard	10650986	0.1097	0.002438	0.3205	0.009157	0.00018	136
	rs17761026	ANKRD33B NCBI Gene Pubmed Genecard	10660762	0.1114	5.397e-05	1	0.002841	0.00026	100
5	Best: rs6865544 (2)	Gene	82.93-82.97Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs6865544		82933140	0.01035	0.3892	1	1.515e-05	0.0003	86
	rs6864342	HAPLN1 NCBI Gene Pubmed Genecard	82973294	0.009553	1	1	0.00027	0.00017	146
6	Best: rs9348440 (2)	Gene	20.75-20.83Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs9348440	CDKAL1 NCBI Gene Pubmed Genecard	20749315	0.1372	0.03632	0.08157	0.0001802	0.00045	49
	rs9465871	CDKAL1 NCBI Gene Pubmed Genecard	20825234	0.1953	0.2329	0.07211	3.258e-06	0.00043	53
9	Best: rs488101 (4)	Gene	117.69-117.80Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs11793751		117693568	0.1417	0.2639	0.3653	1	0.00024	110
	rs2458879		117783588	0.3848	1	0.847	0.3513	0.00048	43
	rs488101		117787179	0.3634	4.528e-08	0.5867	6.541e-07	0.00088	27
	rs2151370		117804641	0.3767	0.6605	0.7864	0.07414	0.00025	105
10	Best: rs11007003 (2)	Gene	28.62-28.64Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs3936497		28619975	0.07425	0.7548	0.0002235	0.1565	0.00014	189
	rs11007003		28637314	0.06793	0.0131	0.08634	0.02703	0.00023	112
10	Best: rs11193797 (2)	Gene	84.07-84.08Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs12265675	NRG3 NCBI Gene Pubmed Genecard	84069725	0.08519	0.006311	0.01642	0.5799	0.00019	127
	rs11193797	NRG3 NCBI Gene Pubmed Genecard	84083975	0.08345	0.009126	0.006654	0.4343	0.00025	102
10	Best: rs7077039 (10)	Gene	114.74-114.80Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs4074720	TCF7L2 NCBI Gene Pubmed Genecard	114738487	0.4904	0.8201	0.3195	4.807e-11	0.00041	57
	rs7901695	TCF7L2 NCBI Gene Pubmed Genecard	114744078	0.3485	0.5361	0.2389	1.744e-12	0.00074	32
	rs4506565	TCF7L2 NCBI Gene Pubmed Genecard	114746031	0.3515	0.4766	0.3573	1.65e-12	0.00066	35
	rs4132670	TCF7L2 NCBI Gene Pubmed Genecard	114757761	0.3516	0.4473	0.3366	5.665e-12	0.00051	40
	rs10787472	TCF7L2 NCBI Gene Pubmed Genecard	114771287	0.491	1	0.2238	3.115e-11	0.00047	45
	rs12243326	TCF7L2 NCBI Gene Pubmed Genecard	114778805	0.314	0.8423	0.5042	1.821e-10	0.00031	82
	rs7077039	TCF7L2 NCBI Gene Pubmed Genecard	114779067	0.4832	1	0.1476	3.779e-12	0.00087	28
	rs11196205	TCF7L2 NCBI Gene Pubmed Genecard	114797037	0.4937	0.7159	0.2106	8.398e-11	0.00045	51
	rs10885409	TCF7L2 NCBI Gene Pubmed Genecard	114798062	0.4931	0.7501	0.2387	1.101e-10	0.00038	64
	rs11196208	TCF7L2 NCBI Gene Pubmed Genecard	114801306	0.4922	0.9275	0.3199	7.389e-11	0.00036	69
11	Best: rs392981 (3)	Gene	16.84-16.88Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs392981	PLEKHA7 NCBI Gene Pubmed Genecard	16835031	0.09386	0.162	0.009958	0.1286	0.00019	131
	rs10741712	PLEKHA7 NCBI Gene Pubmed Genecard	16871848	0.09826	0.04027	0.01671	0.06556	0.00018	139
	rs177545	PLEKHA7 NCBI Gene Pubmed Genecard	16881674	0.0945	0.1024	0.01912	0.1299	0.00015	173
11	Best: rs11038203 (2)	Gene	44.89-44.89Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs11038203	TSPAN18 NCBI Gene Pubmed Genecard	44887617	0.005322	1	1	3.83e-09	0.0044	12
	rs17787207	TSPAN18 NCBI Gene Pubmed Genecard	44892561	0.00822	1	1	0.5687	0.00037	66
11	Best: rs10501796 (3)	Gene	92.07-92.09Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs4122086	FAT3 NCBI Gene Pubmed Genecard	92070494	0.009032	1	1	0.5865	0.001	26
	rs10501795	FAT3 NCBI Gene Pubmed Genecard	92087066	0.008929	1	1	0.5119	0.0013	23
	rs10501796	FAT3 NCBI Gene Pubmed Genecard	92092804	0.005315	1	1	4.282e-09	0.0039	14
12	Best: rs10492267 (4)	Gene	96.80-96.93Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs17027652		96802618	0.03899	1	0.3203	0.6301	0.0096	7
	rs10860262		96851491	0.04262	0.7845	0.361	0.6833	0.013	5
	rs10492267		96851806	0.02615	9.728e-08	0.8067	7.557e-30	0.044	2
	rs2192796		96927337	0.05698	1	0.5975	0.3066	0.0025	17
23	Best: rs9988376 (2)	Gene	118.19-118.20Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs12353619		118190045	0.04125	1	1	0.04472	0.00014	183
	rs9988376		118201076	0.0427	1	0.7542	0.06397	0.00015	171