T-Trees

A novel tree-based approach for Genome-Wide Association Studies

Supplementary data

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1	Best: rs852996 (5)	Gene	226.95-226.99Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs852996		226952791	0.009293	0.000255	1	1.046e-17	0.022	2
	rs853002		226956611	0.0163	0.4361	1	0.6269	0.0039	7
	rs853007		226959789	0.01631	0.4364	1	0.6269	0.0035	8
	rs701156		226978457	0.0165	0.4168	1	1	0.0026	14
	rs853443		226988648	0.01691	0.4558	1	0.6904	0.0024	17
1	Best: rs6680230 (3)	Gene	234.34-234.34Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16835926		234339215	0.1799	0.0004251	0.2758	0.02628	0.00016	180
	rs7525233		234339548	0.1795	0.001183	0.2231	0.03657	0.00014	198
	rs6680230		234341846	0.1807	0.0007572	0.2254	0.03477	0.00018	151
2	Best: rs2953145 (2)	Gene	241.24-241.24Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2953146	RNPEPL1 NCBI Gene Pubmed Genecard	241235242	0.2095	0.002224	0.9578	1.783e-05	0.00017	167
	rs2953145	RNPEPL1 NCBI Gene Pubmed Genecard	241235586	0.2121	0.006781	0.9582	2.361e-05	0.00026	102
6	Best: rs2610769 (3)	Gene	89.34-89.38Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs2246529		89341458	0.09856	0.1818	0.002562	0.138	0.00016	175
	rs2610769		89374315	0.15	0.11	0.002164	0.02108	0.00021	122
	rs2756368	RNGTT NCBI Gene Pubmed Genecard	89382364	0.1461	0.03781	0.009843	0.0584	0.00019	135
8	Best: rs16878694 (2)	Gene	32.03-32.03Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7821190	NRG1 NCBI Gene Pubmed Genecard	32028147	0.003557	1	1	6.533e-07	0.00032	85
	rs16878694	NRG1 NCBI Gene Pubmed Genecard	32030847	0.001318	1	1	5.964e-06	0.00042	67
9	Best: rs10123713 (2)	Gene	21.85-22.00Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10123713	MTAP NCBI Gene Pubmed Genecard	21854552	0.005497	1	1	4.688e-11	0.0019	20
	rs3217986	CDKN2B NCBI Gene Pubmed Genecard CDKN2B-AS1 NCBI Gene Pubmed Genecard	21995330	0.08426	0.08216	0.0741	0.006072	0.00021	124
10	Best: rs12355606 (3)	Gene	18.53-18.55Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs10828308	CACNB2 NCBI Gene Pubmed Genecard	18534882	0.009539	1	1	0.08979	0.00052	51
	rs12355606	CACNB2 NCBI Gene Pubmed Genecard	18537827	0.006418	1	1	1.024e-12	0.011	3
	rs10508559	CACNB2 NCBI Gene Pubmed Genecard	18545319	0.009312	1	1	0.04209	0.00036	70
10	Best: rs7082404 (2)	Gene	77.12-77.15Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs7082404		77116071	0.003551	1	1	6.772e-07	0.0012	26
	rs1875163		77146649	0.006375	1	1	0.1548	0.00017	160
11	Best: rs1822295 (3)	Gene	10.16-10.19Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs12286927	SBF2 NCBI Gene Pubmed Genecard	10161787	0.05807	0.04899	0.001289	0.1731	0.00021	123
	rs16907568	SBF2 NCBI Gene Pubmed Genecard	10168778	0.05878	0.07451	0.0008807	0.3806	0.00014	196
	rs1822295	SBF2 NCBI Gene Pubmed Genecard	10189732	0.05712	0.04828	0.002855	0.07417	0.00024	109
14	Best: rs743276 (2)	Gene	53.68-53.70Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs708544		53682549	0.1079	0.1433	0.0007811	0.154	0.00018	145
	rs743276		53701181	0.1054	0.1643	0.00116	0.1669	0.00021	127
23	Best: rs3928369 (5)	Gene	32.36-32.37Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs3928369	DMD NCBI Gene Pubmed Genecard	32356769	0.2407	0.006535	0.1835	0.002286	0.0011	27
	rs5928022	DMD NCBI Gene Pubmed Genecard	32356784	0.2444	0.195	0.1475	0.002196	0.00096	31
	rs808547	DMD NCBI Gene Pubmed Genecard	32371695	0.1904	0.768	0.109	0.0002563	0.00078	40
	rs808540	DMD NCBI Gene Pubmed Genecard	32374111	0.2087	0.282	0.3601	0.001567	0.00095	33
	rs808539	DMD NCBI Gene Pubmed Genecard	32374143	0.2061	0.1732	0.4901	0.002375	0.00078	39
23	Best: rs17273161 (4)	Gene	35.97-36.03Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16987407		35968032	0.0992	0.2192	0.6701	0.0008511	0.00024	108
	rs12014468		35969864	0.1045	0.5027	0.5879	0.001294	0.00032	82
	rs17273161		36002399	0.103	0.7331	0.6782	0.0006058	0.00043	64
	rs6527545	CXorf30 NCBI Gene Pubmed Genecard	36031799	0.1036	0.6132	0.6834	0.001608	0.00023	116
23	Best: rs975687 (2)	Gene	110.31-110.32Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs16986464	CAPN6 NCBI Gene Pubmed Genecard	110310427	0.02733	1	1	0.006854	0.00018	152
	rs975687	CAPN6 NCBI Gene Pubmed Genecard	110318150	0.03025	1	1	0.0002427	0.0093	4
23	Best: rs12689820 (2)	Gene	134.83-134.83Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs6654309	SLC9A6 NCBI Gene Pubmed Genecard	134830202	0.03362	0.6311	0.2623	0.02423	0.00026	103
	rs12689820	SLC9A6 NCBI Gene Pubmed Genecard	134832528	0.03083	0.6252	0.2592	0.0153	0.0011	28
23	Best: rs5966463 (2)	Gene	144.00-144.00Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs9306723		144002178	0.1815	0.003298	0.6134	0.0438	0.00042	66
	rs5966463		144002395	0.1821	0.001276	0.557	0.04119	0.00054	49
23	Best: rs4844081 (2)	Gene	147.79-147.86Mb	MAF	HWE(case)	HWE(cont)	p-value	imp.	rank
	rs4844081	AFF2 NCBI Gene Pubmed Genecard	147787161	0.03282	1	0.08787	0.1149	0.00085	36
	rs12384290		147862287	0.04274	0.4946	0.2225	0.1213	0.00016	171